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Molecular Computing [Electronic resources] - نسخه متنی

Tanya Sienko

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Table of Contents

Molecular Computing

Introduction - What Is Molecular Computing?

Chapter 1: Conformation-Based Computing - A Rationale and a Recipe

1.2 Algorithmic Complexity Rationale

1.3 Trade-Off Principle

1.4 Pertinent Molecular Properties

1.5 Example: Protein Solubility as a Language

1.6 Macro-Micro Interface

1.7 Prototype System

1.8 Multienzyme Response Surfaces: A Simulated Example

1.9 Architectures and Adaptive Procedures

1.10 Transformal Computing

Acknowledgments

Chapter 2: Molecular Recognition - Storage and Processing of Molecular Information

2.1 Definition of Molecular Recognition

2.2 Molecular Recognition: How to Do It Right the First Time

2.3 Examples of Molecular-Recognition Processes

2.4 Effects of Complexation

2.5 Multiple Recognition and its Applications

2.6 Molecular Recognition in Chemical Systems

2.7 Self-Assembly, Self-Recognition, and Self-Organization

2.9 Thermodynamics, Information, and Entropy

Chapter 3: Computing in Reaction-Diffusion and Excitable Media - Case Studies of Unconventional Processors

3.1 Reaction-Diffusion and Excitation

3.2 What Is a Reaction-Diffusion Processor?

3.3 How Do We Simulate Reaction-Diffusion Processors?

3.4 Specialized Processors

3.5 Plane Subdivision

3.6 Skeletonization

3.7 Reaction-Diffusion Robots

3.8 Computation Universal Processors

3.9 Stationary Circuits

3.10 Dynamical Circuits: Collision-Based Computing

3.11 Discovering Computing Abilities

3.12 Discussion

Chapter 4: Chemical-Based Computing and Problems of High Computational Complexity - The Reaction-Diffusion Paradigm

4.2 Complexity: Structural, Behavioral, and Computational

4.3 Behavioral Complexity of Biomolecular Systems

4.4 General Principles of Information Processing Inherent in Biomolecular and Simple Biological Entities

4.5 A Biomolecular Reaction-Diffusion Processor: Basic Principles

4.6 Amazing Belousov-Zhabotinsky Media

4.7 Image Processing by Belkousov-Zhabotinsky-Type Media

4.8 More Complicated Problem: Finding the Shortest Path in a Labyrinth

4.9 Recognition Capabilities of Coupled Reaction-Diffusion Systems

4.10 Numerical Modeling: From the Generation of Button Textures up to Pattern Formation in Ecological Systems

4.11 What Next: Toward a Biomolecular Computer?

Chapter 5: DNA Computing and Its Frontiers

5.2 The New World of DNA Computing

5.3 The Old World of DNA Computing

5.4 Conclusions

Chapter 6: Bioelectronics and Protein-Based Optical Memories and Processors

6.1 Bioelectronics versus Semiconductor Electronics

6.2 Bioelectronic Devices Based on Bacteriorhodopsin

6.3 Genetic Engineering of Proteins for Device Applications

Chapter 7: Bioelectronics and Biocomputers

7.3 Molecular Electronic Devices

7.4 Biocomputers

List of Figures

List of Sidebars

توضیحات

افزودن یادداشت جدید

Acknowledgments

This material is based upon work supported by the U.S. National Science Foundation under grant numbers ECS-9704190 and CCR-9610054, and by NASA under grant number NCC2-1189.